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Apple Cheesecake Cookie Cups are a cream cheese infused sugar cookie full of cinnamon and apples. This is the perfect easy cookie recipe for fall and apple season!


Apple Cheesecake Cookie Cups in a stack on a rack

It’s apple season! Apple Hill outside Sacramento is now open for business although I won’t be going until it cools down quite a bit. There’s nothing like going apple picking, cider drinking, and pie eating when it’s 90°F. What I love most about apple season is that apple prices drop and there are a ton more options at the store. In California we can get good apples all year long, of course, but in the fall they taste so much better.

Apple season is the perfect time to make all the apple types of desserts, like dump cake or pie or pie bars or cookies. It’s also the time I buy gallons of cider to make quick bread loaves and cakes (and, yes, even pie!) As you can see, I’m in love with all things apple. And now I’m in love with Apple Cheesecake Cookie Cups! These little bites of heaven are a brown sugar cookie that’s tender and soft and full of diced apples and cinnamon. Dusted with some powdered sugar they’re the perfect cookie for fall, especially if you’ve gone apple picking.

Apple Cheesecake Cookie Cups in a stack with challenge cream cheese behind

These are called cheesecake cookies because I made them with a combination of butter and cream cheese. I’ve only ever made cream cheese cookies once before and it was so long ago all I remembered was that they were good. You guys, they’re better than good. The cream cheese makes them softer and fluffier and adds that telltale tang to the cookie flavor. With the apples and brown sugar, these taste like a nice bite of apple cheesecake! If you’ve never tried substituting some of the butter in a cookie recipe with cream cheese, you must try it.

When you’re choosing ingredients for this recipe, be sure to use the ones you love. I used Granny Smith apples because they’re my favorite for baking. They hold up and add a bit of tart with the sweet cookie flavor. Of course, a cheesecake cookie has to have cream cheese, so I used my favorite, Challenge Cream Cheese as well as Challenge Unsalted Butter. I’ve been using their butter since I was a kid and it’s my family’s favorite. The cream cheese is my favorite too – it’s so soft and creamy. If you thought you couldn’t buy challenge in your area, good news! Challenge is now available nationwide. Click here to find it near you.

You could definitely make these as a regular cookie, but I love making cookie cups or bites because then I don’t have to worry about them spreading. I don’t have to chill the dough and they pop easily out of the muffin pan. Bite sized cookies like this go perfectly on a cookie tray, so be sure to save this recipe for holiday baking!

Apple Cheesecake Cookie Cups are EASY to make and perfect for freezing so you’ll have them all season long.

Apple Cheesecake Cookie Cups collage of three photos

Tips for making the perfect cookie cups:

  • Make sure to use nonstick cooking spray or grease your pans well for easy release. Let them cool a bit before taking them out of the pan too, and a butter knife can help release them easier.
  • If you don’t love the apples in these cookies, add whatever you like! I can’t wait to try chocolate chips.
  • Try to dice the apples as small as you can, it makes for easier eating.
  • These cookies freeze well and can be made up to a month ahead of time.

Apple Cheesecake Cookie Bites

Apple Cheesecake Cookie Cups

5 from 4 votes
Apple Cheesecake Cookie Cups are a cream cheese infused sugar cookie full of cinnamon and apples. This is the perfect easy cookie recipe for fall and apple season!
Yield 20 cookies


  • 1/4 cup unsalted Challenge Butter softened
  • 4 ounces Challenge Cream Cheese softened
  • 3/4 cup packed brown sugar
  • 1 egg yolk
  • 1 teaspoon vanilla extract
  • 1/2 teaspoon baking powder
  • 1/4 teaspoon baking soda
  • 1/2 teaspoon cinnamon
  • 1/4 teaspoon salt
  • 1 1/4 cups all purpose flour
  • 1 large Granny Smith Apple or your favorite kind (peeled, cored, and diced small)
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  • Preheat oven to 350°F. Spray mini muffin pans with nonstick cooking spray.
  • Beat butter and cream cheese until smooth. Mix in brown sugar until mixture is creamy, then mix in egg and vanilla. Add baking powder, baking soda, cinnamon, and salt and mix until combined then slowly mix in flour until cookie dough forms. Stir in diced apples.
  • Scoop 2 tablespoon balls of dough into each muffin cavity. Press lightly to compact. Bake for 10-20 minutes or until golden brown around the edges. Cool at least 10 minutes before removing from pan.
  • Store in an airtight container for up to 3 days or freeze for up to one month.
  • Serving suggestion: dust with powdered sugar before serving.

Recipe Video

Nutritional information not guaranteed to be accurate

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This post has been sponsored by Challenge Dairy. All opinions are 100% my own.





Last Updated on May 12, 2020

Dorothy Kern

Welcome to Crazy for Crust, where I share recipes that are sometimes crazy, often with a crust, and always served with a slice of life.

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Recipe Rating


  1. This is a pretty simple recipe… and so tasty!! I drizzled some butterscotch topping over top, and then sprinkled powder sugar.

  2. Wow, this is a great recipe. I just made it. I am following you and other cooking websites for making recipes but your way of cooking is amazing.Last night i made Chicken Keema Paratha Recipe .It’s taste so delicious.

  3. hello Dorothy….! this is one of my favorite dish till now. your dish looks so delicious and yummy i will make it in few upcoming days…Thanks for the sharing and keep shared your amazing ideas and recipes….!